From e3de37bcd7a2d1798bb5c98ca45bbe430982a6c8 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 15 Apr 2021 11:19:08 +0200
Subject: [PATCH] bwa: change index and fastq order for mapping

---
 src/nf_modules/bwa/main.nf | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf
index 5ae36893..a1c8fa0d 100644
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
@@ -38,8 +38,8 @@ process mapping_fastq {
   }
 
   input:
-  tuple val(file_id), path(reads)
   tuple val(index_id), path(index)
+  tuple val(file_id), path(reads)
 
   output:
   tuple val(file_id), path("*.bam"), emit: bam
-- 
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