From da3831bbb23aba0ea701ef0a1ea26d837c665cad Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 7 Jun 2019 11:17:02 +0200
Subject: [PATCH] htseq: fix singularity config
---
src/nf_modules/htseq/htseq.config | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/src/nf_modules/htseq/htseq.config b/src/nf_modules/htseq/htseq.config
index c8f844e9..a04f0851 100644
--- a/src/nf_modules/htseq/htseq.config
+++ b/src/nf_modules/htseq/htseq.config
@@ -17,6 +17,10 @@ profiles {
singularity.enabled = true
process {
withName: sort_bam {
+ container = "file://bin/samtools:1.7.img"
+ cpus = 1
+ }
+ withName: counting {
container = "file://bin/htseq:0.11.2.img"
cpus = 1
}
--
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