From d42ded329794c628e259d7e63f582002fa751d10 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 21 Jun 2021 16:28:05 +0200
Subject: [PATCH] gatk4: remove map only usefull for testing
---
src/nf_modules/gatk4/main.nf | 3 ---
1 file changed, 3 deletions(-)
diff --git a/src/nf_modules/gatk4/main.nf b/src/nf_modules/gatk4/main.nf
index 63d2b8af..bc7e7a72 100644
--- a/src/nf_modules/gatk4/main.nf
+++ b/src/nf_modules/gatk4/main.nf
@@ -192,9 +192,6 @@ workflow call_variants_all_sample {
)
consolidate_gvcf(
validate_gvcf.out.gvcf
- .map {
- it -> ["library", it[1], it[2]]
- }
.groupTuple(),
fasta_idx.collect()
)
--
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