From ce6cb60bfa6c991369edb2db4c3a9825a2b41175 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 16 Mar 2021 17:26:49 +0100
Subject: [PATCH] samtools: fix output for multiqc process
---
src/nf_modules/samtools/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/samtools/main.nf b/src/nf_modules/samtools/main.nf
index 0ccc1dfe..3e659ce8 100644
--- a/src/nf_modules/samtools/main.nf
+++ b/src/nf_modules/samtools/main.nf
@@ -208,7 +208,7 @@ process flagstat_2_multiqc {
tuple val(file_id), path(tsv), emit: tsv
output:
- tuple val(file_id), path("*.txt"), emit: report
+ path "*.txt" , emit: report
"""
mv ${tsv} ${tsv.simpleName}.flagstat.txt
"""
@@ -221,7 +221,7 @@ process idxstat_2_multiqc {
tuple val(file_id), path(tsv), emit: tsv
output:
- tuple val(file_id), path("*.txt"), emit: report
+ path "*.txt", emit: report
"""
mv ${tsv} ${tsv.simpleName}.idxstats.txt
"""
--
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