From cc105980fd9604fd95063101c94f707bc9c46a24 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 30 Jun 2020 14:43:57 +0200
Subject: [PATCH] docker: add bamutils 1.0.14
---
.../bamutils/1.0.14/Dockerfile | 22 +++++++++++++++++++
.../bamutils/1.0.14/docker_init.sh | 4 ++++
2 files changed, 26 insertions(+)
create mode 100644 src/.docker_modules/bamutils/1.0.14/Dockerfile
create mode 100755 src/.docker_modules/bamutils/1.0.14/docker_init.sh
diff --git a/src/.docker_modules/bamutils/1.0.14/Dockerfile b/src/.docker_modules/bamutils/1.0.14/Dockerfile
new file mode 100644
index 00000000..9a116c6d
--- /dev/null
+++ b/src/.docker_modules/bamutils/1.0.14/Dockerfile
@@ -0,0 +1,22 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV BAMUTILS_VERSION=1.0.14
+ENV PACKAGES git \
+ build-essential \
+ g++ \
+ libssl-dev \
+ zlib1g-dev
+
+RUN apt-get update && apt-get -y install ${PACKAGES}
+
+RUN git clone https://github.com/statgen/libStatGen && \
+cd libStatGen && \
+git checkout fae4fca874b3b78bf9b61c0 && \
+make && \
+cd ../ && \
+git clone https://github.com/statgen/bamUtil && \
+cd bamUtil && \
+git checkout v${BAMUTILS_VERSION} && \
+make && \
+make install
diff --git a/src/.docker_modules/bamutils/1.0.14/docker_init.sh b/src/.docker_modules/bamutils/1.0.14/docker_init.sh
new file mode 100755
index 00000000..2d89e9cc
--- /dev/null
+++ b/src/.docker_modules/bamutils/1.0.14/docker_init.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+docker pull lbmc/bamutils:1.0.14
+docker build src/.docker_modules/bamutils/1.0.14 -t 'lbmc/bamutils:1.0.14'
+docker push lbmc/bamutils:1.0.14
--
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