From cadb073c1e175e47b36674b5b2fd3330f36ba265 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 24 Mar 2020 09:26:50 +0100
Subject: [PATCH] Dockerfile: gatk3 add gatk3 executable script

---
 src/.docker_modules/gatk/3.8.0/Dockerfile | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/src/.docker_modules/gatk/3.8.0/Dockerfile b/src/.docker_modules/gatk/3.8.0/Dockerfile
index 185b9121..8d1dbc91 100644
--- a/src/.docker_modules/gatk/3.8.0/Dockerfile
+++ b/src/.docker_modules/gatk/3.8.0/Dockerfile
@@ -2,3 +2,5 @@ FROM broadinstitute/gatk3:3.8-0
 MAINTAINER Laurent Modolo
 
 ENV GATK_VERSION=3.8.0
+
+RUN echo "#\!/bin/sh\njava -jar /usr/GenomeAnalysisTK.jar \$0" > /bin/gatk3 
-- 
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