From c4c0f64ae0c9d6cb5348e034c7901a228ee206d3 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Thu, 6 May 2021 09:25:44 +0200 Subject: [PATCH] flexi_splitter: double escape sed cmd --- src/nf_modules/flexi_splitter/main.nf | 4 +--- 1 file changed, 1 insertion(+), 3 deletions(-) diff --git a/src/nf_modules/flexi_splitter/main.nf b/src/nf_modules/flexi_splitter/main.nf index 47e67604..d846274a 100644 --- a/src/nf_modules/flexi_splitter/main.nf +++ b/src/nf_modules/flexi_splitter/main.nf @@ -49,9 +49,8 @@ process split_file { rm -Rf split/unassigned mkdir -p results/ find split -type "f" | \ - sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" | + sed -E "s|(.*/split/(.*)/(.*))|\\1 \\2_\\3|g" | awk '{system("mv "\$1" results/"\$2)}' - rm -Rf split """ else """ @@ -61,6 +60,5 @@ process split_file { find split -type "f" | \ sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" | awk '{system("mv "\$1" results/"\$2)}' - rm -Rf split """ } -- GitLab