From c2fad6c05665fd79046aa37417863106e8cdbd02 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Wed, 20 Nov 2019 14:34:22 +0100
Subject: [PATCH] docker_files: fix sambamba
---
src/.docker_modules/sambamba/0.6.9/Dockerfile | 7 +++----
src/.docker_modules/sambamba/0.6.9/docker_init.sh | 2 +-
2 files changed, 4 insertions(+), 5 deletions(-)
diff --git a/src/.docker_modules/sambamba/0.6.9/Dockerfile b/src/.docker_modules/sambamba/0.6.9/Dockerfile
index 689d0265..f45a6541 100644
--- a/src/.docker_modules/sambamba/0.6.9/Dockerfile
+++ b/src/.docker_modules/sambamba/0.6.9/Dockerfile
@@ -11,7 +11,6 @@ RUN apt-get update && \
apt-get install -y --no-install-recommends ${PACKAGES} && \
apt-get clean
-RUN curl -k -L https://github.com/biod/sambamba/releases/download/v${SAMBAMBA_VERSION}/sambamba_v${SAMBAMBA_VERSION}_linux.tar.bz2 -o sambamba_v${SAMBAMBA_VERSION}_linux.tar.bz2 && \
-tar xvjf sambamba_v${SAMBAMBA_VERSION}_linux.tar.bz2 && \
-mv sambamba /usr/bin/ && \
-rm -R sambamba_v${SAMBAMBA_VERSION}_linux*
+RUN curl -k -L https://github.com/biod/sambamba/releases/download/v${SAMBAMBA_VERSION}/sambamba-${SAMBAMBA_VERSION}-linux-static.gz -o sambamba_v${SAMBAMBA_VERSION}_linux.gz && \
+gunzip sambamba_v${SAMBAMBA_VERSION}_linux.gz && \
+mv sambamba_v${SAMBAMBA_VERSION}_linux /usr/bin/sambamba
diff --git a/src/.docker_modules/sambamba/0.6.9/docker_init.sh b/src/.docker_modules/sambamba/0.6.9/docker_init.sh
index 7431118e..5a0e2fcc 100755
--- a/src/.docker_modules/sambamba/0.6.9/docker_init.sh
+++ b/src/.docker_modules/sambamba/0.6.9/docker_init.sh
@@ -1,2 +1,2 @@
#!/bin/sh
-docker build src/docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9'
+docker build src/.docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9'
--
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