diff --git a/src/.docker_modules/kb/0.26.0/t2g.py b/src/.docker_modules/kb/0.26.0/t2g.py index 82f2a1dae34b11aa5beede5ba423083b1e656f78..c9b230618661620f2e4fad79837d123d4d834924 100755 --- a/src/.docker_modules/kb/0.26.0/t2g.py +++ b/src/.docker_modules/kb/0.26.0/t2g.py @@ -16,7 +16,7 @@ if __name__ == "__main__": help="gtf file", metavar="FILE") args = parser.parse_args() - db = gffutils.create_db(args.gtf, dbfn = ":memory:", force = True, merge_strategy="merge", disable_infer_transcripts=False, disable_infer_genes=False) + db = gffutils.create_db(args.gtf, dbfn = ":memory:", force = True, merge_strategy="merge", disable_infer_transcripts=True, disable_infer_genes=True) with open("t2g.txt", "w") as t2g: for gene in db.all_features(): for transcript in db.children(gene, featuretype='transcript', order_by='start'):