From bca33ec163f11d6a4e0edce03645dda1b54b629b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 15 Apr 2021 15:08:49 +0200
Subject: [PATCH] bwa: fix variable name :46
---
src/nf_modules/bwa/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf
index 02f641b8..2f47c239 100644
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
@@ -43,7 +43,7 @@ process mapping_fastq {
output:
tuple val(file_id), path("*.bam"), emit: bam
- tuple val(file_id), path("${id}_bwa_report.txt"), emit: report
+ tuple val(file_id), path("${file_prefix}_bwa_report.txt"), emit: report
script:
if (file_id instanceof List){
--
GitLab