From b9a27794bceb661343386615b44fead6837ce7de Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 21 May 2021 10:00:49 +0200
Subject: [PATCH] gffread: add -x option
---
src/nf_modules/gffread/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/gffread/main.nf b/src/nf_modules/gffread/main.nf
index 2414cbd7..6b673bb1 100644
--- a/src/nf_modules/gffread/main.nf
+++ b/src/nf_modules/gffread/main.nf
@@ -25,6 +25,6 @@ process gffread {
file_prefix = file_id
}
"""
- gffread ${gtf} -g ${fasta} -o ${file_prefix}.fasta
+ gffread ${gtf} -g ${fasta} -x -o ${file_prefix}.fasta
"""
}
\ No newline at end of file
--
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