From b7d9581d0b473f2de9d330eea7c51644036f3e99 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 14:01:00 +0200
Subject: [PATCH] test in2p3: add more details in mail report
---
src/kallisto_index.pbs | 2 +-
src/nf_modules/kallisto/indexing.config | 2 +-
2 files changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/kallisto_index.pbs b/src/kallisto_index.pbs
index f280ef6b..257b301f 100644
--- a/src/kallisto_index.pbs
+++ b/src/kallisto_index.pbs
@@ -26,4 +26,4 @@ CONFIG=${SCRATCH}/nextflow/src/nf_modules/kallisto/indexing.config
${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3_singularity \
--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \
--w "${SCRATCH}"
+-w "${SCRATCH}" -ansi-log false
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index fd223447..7ba041dd 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -59,7 +59,7 @@ profiles {
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n \
- -o ~/logs/ -e ~/logs/"
+ -o ~/logs/ -e ~/logs/ -M laurent.modolo@ens-lyon.fr -m beas"
cpus = 1
queue = 'huge'
}
--
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