From b6101c6515c2f682e781085a0932f58e99c331a2 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 14:56:11 +0200
Subject: [PATCH] in2p3: test singylarity mount bind config
---
src/nf_modules/kallisto/indexing.config | 1 +
1 file changed, 1 insertion(+)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index b39d4a0b..e0fef67a 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -54,6 +54,7 @@ profiles {
singularity.autoMounts = true
process{
withName: index_fasta {
+ beforeScript = "export SINGULARITY_BIND="/sps,/scratch:/var/singularity/mnt/""
container = "/sps/lbmc/common/singularity/kallisto:0.44.0.img"
scratch = true
stageInMode = "copy"
--
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