From ad8474e6577d8999e0ab99d9aaf039a38c306c58 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 18 Feb 2021 17:05:14 +0100
Subject: [PATCH] fastp: fix output to capture json files
---
src/nf_modules/fastp/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/fastp/main.nf b/src/nf_modules/fastp/main.nf
index 273ae3d3..a44e6e89 100644
--- a/src/nf_modules/fastp/main.nf
+++ b/src/nf_modules/fastp/main.nf
@@ -12,7 +12,7 @@ process fastp_pairedend {
output:
tuple val(pair_id), path("*.fastq.gz"), emit: fastq
- tuple val(pair_id), path("*.{zip,html}"), emit: report
+ tuple val(pair_id), path("*.{zip,html,json}"), emit: report
script:
"""
@@ -40,7 +40,7 @@ process fastp_singleend {
output:
tuple val(pair_id), path("*.fastq.gz"), emit: fastq
- tuple val(pair_id), path("*.{zip,html}"), emit: report
+ tuple val(pair_id), path("*.{zip,html,json}"), emit: report
script:
"""
--
GitLab