From a2c5d6c2160f9f17bc6242a7b310552ec07ec02b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 14 Sep 2018 17:00:47 +0200
Subject: [PATCH] BWA: add docker files
---
src/docker_modules/BWA/0.7.17/Dockerfile | 20 ++++++++++++++++++++
src/docker_modules/BWA/0.7.17/docker_init.sh | 2 ++
2 files changed, 22 insertions(+)
create mode 100644 src/docker_modules/BWA/0.7.17/Dockerfile
create mode 100755 src/docker_modules/BWA/0.7.17/docker_init.sh
diff --git a/src/docker_modules/BWA/0.7.17/Dockerfile b/src/docker_modules/BWA/0.7.17/Dockerfile
new file mode 100644
index 00000000..b218ba08
--- /dev/null
+++ b/src/docker_modules/BWA/0.7.17/Dockerfile
@@ -0,0 +1,20 @@
+FROM ubuntu:18.04
+MAINTAINER Laurent Modolo
+
+ENV BWA_VERSION=0.7.17
+ENV PACKAGES curl=7.58.0* \
+ ca-certificates=20180409 \
+ build-essential=12.4* \
+ zlib1g-dev=1:1.2.11*
+
+RUN apt-get update && \
+ apt-get install -y --no-install-recommends ${PACKAGES} && \
+ apt-get clean
+
+RUN curl -k -L https://github.com/lh3/bwa/releases/download/v${BWA_VERSION}/bwa-${BWA_VERSION}.tar.bz2 -o bwa-v${BWA_VERSION}.tar.bz2 && \
+tar xjf bwa-v${BWA_VERSION}.tar.bz2 && \
+cd bwa-${BWA_VERSION}/ && \
+make && \
+cp bwa /usr/bin && \
+cd .. && \
+rm -R bwa-${BWA_VERSION}/
diff --git a/src/docker_modules/BWA/0.7.17/docker_init.sh b/src/docker_modules/BWA/0.7.17/docker_init.sh
new file mode 100755
index 00000000..888bec68
--- /dev/null
+++ b/src/docker_modules/BWA/0.7.17/docker_init.sh
@@ -0,0 +1,2 @@
+#!/bin/sh
+docker build src/docker_modules/BWA/0.7.17 -t 'bwa:0.7.17'
--
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