diff --git a/src/docker_modules/umitools/0.3.4/Dockerfile b/src/docker_modules/umitools/0.3.4/Dockerfile deleted file mode 100644 index c5e417b285aa0ed0bc6e5bdd5d446d5291a77ad0..0000000000000000000000000000000000000000 --- a/src/docker_modules/umitools/0.3.4/Dockerfile +++ /dev/null @@ -1,2 +0,0 @@ -FROM quay.io/biocontainers/umitools:0.3.4--py37_1 -MAINTAINER Laurent Modolo diff --git a/src/docker_modules/umitools/0.3.4/docker_init.sh b/src/docker_modules/umitools/0.3.4/docker_init.sh deleted file mode 100755 index 4a5b59aeb0b4eac68b6e2d7930e18f20f9fb46d7..0000000000000000000000000000000000000000 --- a/src/docker_modules/umitools/0.3.4/docker_init.sh +++ /dev/null @@ -1,2 +0,0 @@ -#!/bin/sh -docker build src/docker_modules/umitools/0.3.4 -t 'umitools:0.3.4' diff --git a/src/psmn_modules b/src/psmn_modules index 0c034f5bbeb8e91cecc04466b74654503a94ac7c..7941cf21b2ec744bb8d2eae0a623305c4ee23ced 160000 --- a/src/psmn_modules +++ b/src/psmn_modules @@ -1 +1 @@ -Subproject commit 0c034f5bbeb8e91cecc04466b74654503a94ac7c +Subproject commit 7941cf21b2ec744bb8d2eae0a623305c4ee23ced diff --git a/src/singularity_modules/umitools/0.3.4/build.sh b/src/singularity_modules/umitools/0.3.4/build.sh deleted file mode 100755 index 8ccd233e4738b0599337e7c280d5f837fa6a06bf..0000000000000000000000000000000000000000 --- a/src/singularity_modules/umitools/0.3.4/build.sh +++ /dev/null @@ -1,3 +0,0 @@ -#/bin/sh -sudo singularity build --force bin/umitools:0.3.4.sif docker://quay.io/biocontainers/umitools:0.3.4--py37_1 && \ -singularity sign bin/umitools:0.3.4.sif diff --git a/src/singularity_modules/umitools/0.3.4/umitools.def b/src/singularity_modules/umitools/0.3.4/umitools.def deleted file mode 100644 index 4d1dd2affd9e8a9699916db07285bd4b43fd5b20..0000000000000000000000000000000000000000 --- a/src/singularity_modules/umitools/0.3.4/umitools.def +++ /dev/null @@ -1,28 +0,0 @@ -Bootstrap: docker -From: ubuntu:18.04 -%labels -MAINTAINER Laurent Modolo -%post - -UMITOOLS_VERSION=0.3.4 -PACKAGES="git \ -build-essential \ -python-pip \ -ca-certificates \ -python-setuptools \ -python-dev \ -python-numpy \ -python-wheel \ -zlib1g-dev" - -apt-get update && \ -apt-get install -y --no-install-recommends ${PACKAGES} && \ -apt-get clean - -pip install umitools==${UMITOOLS_VERSION} - -%environment -export UMITOOLS_VERSION=0.3.4 - -%runscript -exec /bin/bash "$@"