From 9f50974db7a86cfbbf92d59166c520f2a0f942d2 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 21 May 2019 15:19:52 +0200
Subject: [PATCH] singularity: add ps command to debian containers
---
src/singularity_modules/deeptools/3.0.2/deeptools.def | 1 +
src/singularity_modules/deeptools/3.1.1/deeptools.def | 1 +
src/singularity_modules/ucsc/375/ucsc.def | 1 +
src/singularity_modules/umi_tools/1.0.0/umi_tools.def | 1 +
src/singularity_modules/urqt/d62c1f8/urqt.def | 1 +
5 files changed, 5 insertions(+)
diff --git a/src/singularity_modules/deeptools/3.0.2/deeptools.def b/src/singularity_modules/deeptools/3.0.2/deeptools.def
index 586c60aa..e108aa37 100644
--- a/src/singularity_modules/deeptools/3.0.2/deeptools.def
+++ b/src/singularity_modules/deeptools/3.0.2/deeptools.def
@@ -13,6 +13,7 @@ PACKAGES="build-essential \
python3-dev \
python3-wheel \
zlib1g-dev \
+ procps \
libcurl4-gnutls-dev"
apt-get update && \
diff --git a/src/singularity_modules/deeptools/3.1.1/deeptools.def b/src/singularity_modules/deeptools/3.1.1/deeptools.def
index 7bc5798f..8bae622c 100644
--- a/src/singularity_modules/deeptools/3.1.1/deeptools.def
+++ b/src/singularity_modules/deeptools/3.1.1/deeptools.def
@@ -13,6 +13,7 @@ PACKAGES="build-essential \
python3-dev \
python3-wheel \
zlib1g-dev \
+ procps \
libcurl4-gnutls-dev"
apt-get update && \
diff --git a/src/singularity_modules/ucsc/375/ucsc.def b/src/singularity_modules/ucsc/375/ucsc.def
index d6c764dd..7dd79889 100644
--- a/src/singularity_modules/ucsc/375/ucsc.def
+++ b/src/singularity_modules/ucsc/375/ucsc.def
@@ -13,6 +13,7 @@ PACKAGES="apt-utils \
libssl-dev \
libpng-dev \
uuid-dev \
+ procps \
libmysqlclient-dev \
rsync"
diff --git a/src/singularity_modules/umi_tools/1.0.0/umi_tools.def b/src/singularity_modules/umi_tools/1.0.0/umi_tools.def
index d9ae3e20..0eb75622 100644
--- a/src/singularity_modules/umi_tools/1.0.0/umi_tools.def
+++ b/src/singularity_modules/umi_tools/1.0.0/umi_tools.def
@@ -11,6 +11,7 @@ PACKAGES="bash \
python3 \
python3-dev \
python3-pip \
+ procps \
gcc"
apt-get update && \
diff --git a/src/singularity_modules/urqt/d62c1f8/urqt.def b/src/singularity_modules/urqt/d62c1f8/urqt.def
index 1f59d83e..eba8af97 100644
--- a/src/singularity_modules/urqt/d62c1f8/urqt.def
+++ b/src/singularity_modules/urqt/d62c1f8/urqt.def
@@ -11,6 +11,7 @@ PACKAGES="git \
g++ \
make \
ca-certificates \
+procps \
zlib1g-dev"
apt-get update && \
--
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