From 9eb61947548cf62ff481aa1b685f6278379b826a Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 20 May 2021 17:20:08 +0200
Subject: [PATCH] gffread: add version 0.12.2
---
src/.docker_modules/gffread/0.12.2/Dockerfile | 16 ++++++++++++++++
.../gffread/0.12.2/docker_init.sh | 4 ++++
2 files changed, 20 insertions(+)
create mode 100644 src/.docker_modules/gffread/0.12.2/Dockerfile
create mode 100755 src/.docker_modules/gffread/0.12.2/docker_init.sh
diff --git a/src/.docker_modules/gffread/0.12.2/Dockerfile b/src/.docker_modules/gffread/0.12.2/Dockerfile
new file mode 100644
index 00000000..a60a75fa
--- /dev/null
+++ b/src/.docker_modules/gffread/0.12.2/Dockerfile
@@ -0,0 +1,16 @@
+FROM alpine:3.12
+MAINTAINER Laurent Modolo
+
+ENV GFFREAD_VERSION=0.12.2
+ENV PACKAGES make \
+ g++ \
+ bash \
+ perl
+
+RUN apk update && \
+ apk add ${PACKAGES} && \
+wget http://ccb.jhu.edu/software/stringtie/dl/gffread-${GFFREAD_VERSION}.tar.gz && \
+tar -xvf gffread-${GFFREAD_VERSION}.tar.gz && \
+cd gffread-${GFFREAD_VERSION}/ && \
+make && \
+cp gffread /usr/bin/
diff --git a/src/.docker_modules/gffread/0.12.2/docker_init.sh b/src/.docker_modules/gffread/0.12.2/docker_init.sh
new file mode 100755
index 00000000..72debe46
--- /dev/null
+++ b/src/.docker_modules/gffread/0.12.2/docker_init.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+docker pull lbmc/gffread:0.12.2
+docker build src/.docker_modules/gffread/0.12.2 -t 'lbmc/gffread:0.12.2'
+docker push lbmc/gffread:0.12.2
--
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