From 9e61e551a817ca609d3b24217014a396238a2c76 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 14:18:43 +0200
Subject: [PATCH] in2p3 singularity: fix logs path
---
src/nf_modules/kallisto/indexing.config | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 7ba041dd..5db9785c 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -59,7 +59,7 @@ profiles {
stageOutMode = "rsync"
executor = "sge"
clusterOptions = "-P P_lbmc -l os=cl7 -l sps=1 -r n \
- -o ~/logs/ -e ~/logs/ -M laurent.modolo@ens-lyon.fr -m beas"
+ -o /sps/lbmc/lmodolo/logs/ -e /sps/lbmc/lmodolo/logs/ -M laurent.modolo@ens-lyon.fr -m beas"
cpus = 1
queue = 'huge'
}
--
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