diff --git a/src/nf_modules/fastp/main.nf b/src/nf_modules/fastp/main.nf index c69412e430ad59ad9b62718329771f64a928a190..273ae3d3fd75c096e9093f523f469d1aef394c12 100644 --- a/src/nf_modules/fastp/main.nf +++ b/src/nf_modules/fastp/main.nf @@ -25,6 +25,7 @@ fastp --thread ${task.cpus} \ --out1 ${pair_id}_R1_trim.fastq.gz \ --out2 ${pair_id}_R2_trim.fastq.gz \ --html ${pair_id}.html \ +--json ${pair_id}.json \ --report_title ${pair_id} """ } @@ -50,6 +51,7 @@ fastp --thread ${task.cpus} \ --in1 ${reads} \ --out1 ${pair_id}_trim.fastq.gz \ --html ${pair_id}.html \ +--json ${pair_id}.json \ --report_title ${pair_id} """ }