From 99c06a7a1040e7e25e43f7194932fc99433cc333 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 2 Jun 2021 14:51:16 +0200
Subject: [PATCH] example_marseq.nf: add log for config file
---
src/example_marseq.nf | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/src/example_marseq.nf b/src/example_marseq.nf
index 0a5b004a..4be90c78 100644
--- a/src/example_marseq.nf
+++ b/src/example_marseq.nf
@@ -24,11 +24,12 @@ params.whitelist = "data/expected_whitelist.txt"
params.config = "data/marseq_flexi_splitter.yaml"
params.workflow_type = "classic"
-log.info "fastq files: ${params.fastq}"
-log.info "fasta file : ${params.fasta}"
-log.info "gtf file : ${params.gtf}"
-log.info "transcript_to_gene file : ${params.transcript_to_gene}"
-log.info "whitelist file : ${params.whitelist}"
+log.info "fastq files (--fastq): ${params.fastq}"
+log.info "fasta file (--fasta): ${params.fasta}"
+log.info "gtf file (--gtf): ${params.gtf}"
+log.info "transcript_to_gene file (--transcript_to_gene): ${params.transcript_to_gene}"
+log.info "whitelist file (--whitelist): ${params.whitelist}"
+log.info "config file (--config): ${params.config}"
channel
.fromFilePairs( params.fastq, size: -1)
--
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