diff --git a/src/example_marseq.nf b/src/example_marseq.nf index 0a5b004ad2e77f58331f9ba72ed0dc5fc2944409..4be90c78ffc6570ad3725eceb7ad1ffb6e8bfe70 100644 --- a/src/example_marseq.nf +++ b/src/example_marseq.nf @@ -24,11 +24,12 @@ params.whitelist = "data/expected_whitelist.txt" params.config = "data/marseq_flexi_splitter.yaml" params.workflow_type = "classic" -log.info "fastq files: ${params.fastq}" -log.info "fasta file : ${params.fasta}" -log.info "gtf file : ${params.gtf}" -log.info "transcript_to_gene file : ${params.transcript_to_gene}" -log.info "whitelist file : ${params.whitelist}" +log.info "fastq files (--fastq): ${params.fastq}" +log.info "fasta file (--fasta): ${params.fasta}" +log.info "gtf file (--gtf): ${params.gtf}" +log.info "transcript_to_gene file (--transcript_to_gene): ${params.transcript_to_gene}" +log.info "whitelist file (--whitelist): ${params.whitelist}" +log.info "config file (--config): ${params.config}" channel .fromFilePairs( params.fastq, size: -1)