From 9293f190a33f72274958347b54ab4ac5eea17ceb Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 31 May 2021 10:30:39 +0200
Subject: [PATCH] emaze: change input to follow change to t2g in kb main.nf
---
src/nf_modules/emase-zero/main.nf | 7 ++-----
1 file changed, 2 insertions(+), 5 deletions(-)
diff --git a/src/nf_modules/emase-zero/main.nf b/src/nf_modules/emase-zero/main.nf
index 01134781..410cadb5 100644
--- a/src/nf_modules/emase-zero/main.nf
+++ b/src/nf_modules/emase-zero/main.nf
@@ -12,13 +12,10 @@ workflow count {
take:
bam_idx
fasta
- transcript_to_gene
+ gtf
main:
- transcript_to_gene
- .ifEmpty(["NO T2G", ""])
- .set{ transcript_to_gene_optional }
- tr2g(gtf, transcript_to_gene_optional)
+ tr2g(gtf)
fasta_to_transcripts_lengths(fasta)
bam2ec(bam_idx, fasta_to_transcripts_lengths.out.tsv.collect())
emase(bam2ec.out.bin, bam2ec.out.tsv, tr2g.out.t2g)
--
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