diff --git a/src/nf_modules/gatk4/main.nf b/src/nf_modules/gatk4/main.nf index c767ed702437d506f8b152bb39213b62ce3abdc8..add285f50e89335ad5e7867147555295b85a1109 100644 --- a/src/nf_modules/gatk4/main.nf +++ b/src/nf_modules/gatk4/main.nf @@ -144,8 +144,7 @@ process recalibrate_snp { tag "$file_id" input: - tuple val(file_id), path(snp_file), path(indel_file), path(bam), path(bam_idx) - tuple val(table_id), path(recal_data_table) + tuple val(file_id), path(snp_file), path(indel_file), path(bam), path(bam_idx), path(recal_table) tuple val(ref_id), path(fasta), path(fai), path(dict) output: tuple val(file_id), path("*.bam"), emit: bam