From 8fe24a84d37966ee03cfb45ba6223278ad0465cc Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 17 Feb 2021 11:04:09 +0100
Subject: [PATCH] nextflow.config: fix errorStrategy
---
src/nextflow.config | 12 ++++++------
1 file changed, 6 insertions(+), 6 deletions(-)
diff --git a/src/nextflow.config b/src/nextflow.config
index bd4971a5..5e595b52 100644
--- a/src/nextflow.config
+++ b/src/nextflow.config
@@ -17,7 +17,7 @@ profiles {
docker.temp = "auto"
docker.enabled = true
process {
- errorStrategy 'finish'
+ errorStrategy = 'finish'
memory = '16 GB'
withLabel: big_mem_mono_cpus {
cpus = 1
@@ -31,7 +31,7 @@ profiles {
singularity.enabled = true
singularity.cacheDir = "./bin/"
process {
- errorStrategy 'finish'
+ errorStrategy = 'finish'
memory = '16 GB'
withLabel: big_mem_mono_cpus {
cpus = 1
@@ -46,8 +46,8 @@ profiles {
singularity.cacheDir = "$baseDir/.singularity_psmn/"
singularity.runOptions = "--bind /Xnfs,/scratch"
process{
- errorStrategy 'retry'
- maxRetries 3
+ errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
+ maxRetries = 3
withLabel: big_mem_mono_cpus {
executor = "sge"
clusterOptions = "-cwd -V"
@@ -74,8 +74,8 @@ profiles {
singularity.cacheDir = "$baseDir/.singularity_in2p3/"
singularity.runOptions = "--bind /pbs,/sps,/scratch"
process{
- errorStrategy 'retry'
- maxRetries 3
+ errorStrategy = { sleep(Math.pow(2, task.attempt) * 200 as long); return 'retry' }
+ maxRetries = 3
withLabel: big_mem_mono_cpus {
scratch = true
stageInMode = "copy"
--
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