diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config index 76f5091bf50f9359494905a625645c4fa742fec7..752c099b9bb8b5287753b15cb68d3cd34f9e3bb3 100644 --- a/src/nf_modules/kallisto/indexing.config +++ b/src/nf_modules/kallisto/indexing.config @@ -51,7 +51,7 @@ profiles { } ccin2p3_singularity { singularity.enabled = true - singularity.engineOptions = "--bind /pbs,/sps,/scratch" + singularity.runOptions = "--bind /pbs,/sps,/scratch" process{ withName: index_fasta { beforeScript = "export SINGULARITY_BIND=\"/sps,/scratch:/var/singularity/mnt/\""