From 854a17092c76f4611ef5679fac1eb0ef58ac3067 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Mon, 20 May 2019 14:43:23 +0200
Subject: [PATCH] in2p3: test singularity automount

---
 src/nf_modules/kallisto/indexing.config | 1 +
 1 file changed, 1 insertion(+)

diff --git a/src/nf_modules/kallisto/indexing.config b/src/nf_modules/kallisto/indexing.config
index 5db9785c..b39d4a0b 100644
--- a/src/nf_modules/kallisto/indexing.config
+++ b/src/nf_modules/kallisto/indexing.config
@@ -51,6 +51,7 @@ profiles {
   }
   ccin2p3_singularity {
     singularity.enabled = true
+    singularity.autoMounts = true
     process{
       withName: index_fasta {
         container = "/sps/lbmc/common/singularity/kallisto:0.44.0.img"
-- 
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