From 7632aaf5959def07ac146c01f04200572b582124 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 6 May 2021 09:26:05 +0200
Subject: [PATCH] flexi_splitter: double escape sed cmd
---
src/nf_modules/flexi_splitter/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/flexi_splitter/main.nf b/src/nf_modules/flexi_splitter/main.nf
index d846274a..1991f5f1 100644
--- a/src/nf_modules/flexi_splitter/main.nf
+++ b/src/nf_modules/flexi_splitter/main.nf
@@ -58,7 +58,7 @@ process split_file {
rm -Rf split/unassigned
mkdir -p results/
find split -type "f" | \
- sed -E "s|(.*/split/(.*)/(.*))|\1 \2_\3|g" |
+ sed -E "s|(.*/split/(.*)/(.*))|\\1 \\2_\\3|g" |
awk '{system("mv "\$1" results/"\$2)}'
"""
}
--
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