diff --git a/src/.update_config.sh b/src/.update_config.sh index b41150574e5b6f4720416a25f9d795ec6400db75..3e7c6a1e8f6a7b9c01b5d27bb8fc05cb14a4a633 100644 --- a/src/.update_config.sh +++ b/src/.update_config.sh @@ -10,7 +10,7 @@ fd ".*config" -E "nf_modules" src/ -x perl -0777pe 's|\n\s*singularity {\n\s*sin # update in2p3 config fd ".*config" -E "nf_modules" src/ -x perl -0777pe 's|\n\s*ccin2p3 {\n\s*singularity.enabled = true|\n ccin2p3 {\n singularity.enabled = true\n singularity.cacheDir = "/sps/lbmc/common/singularity/"|mg' -i {} fd ".*config" src/ -x perl -pe 's|container = "lbmc//sps/lbmc/common/singularity/(.*).img"|container = "lbmc/\1"|g' -i {} -fd ".*config" -E "nf_modules" src/ -x perl -0777pe 's|singularity.cacheDir = "/sps/lbmc/common/singularity/"|singularity.cacheDir = "\$baseDir/.src/singularity_in2p3/"|mg' -i {} +fd ".*config" -E "nf_modules" src/ -x perl -0777pe 's|singularity.cacheDir = "/sps/lbmc/common/singularity/"|singularity.cacheDir = "\$baseDir/.singularity_in2p3/"|mg' -i {} # we remove the ccin2p3_conda section fd ".*config" -E "nf_modules" src/ -x perl -0777pe "s|\s*ccin2p3_conda {.*ccin2p3 {\n|\n ccin2p3 {\n|msg" -i {}