From 7212d7bc3e415992b915b990ebb8b9d4d2324ed7 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 6 May 2021 13:01:29 +0200
Subject: [PATCH] alntools: change input to bam to indexed bam
---
src/nf_modules/alntools/main.nf | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/src/nf_modules/alntools/main.nf b/src/nf_modules/alntools/main.nf
index 31e9c6ca..2363e478 100644
--- a/src/nf_modules/alntools/main.nf
+++ b/src/nf_modules/alntools/main.nf
@@ -12,7 +12,7 @@ process bam2ec {
}
input:
- tuple val(file_id), path(bam)
+ tuple val(file_id), path(bam), path(bam_idx)
tuple val(gtf_id), path(gtf)
output:
--
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