diff --git a/src/nf_modules/kallisto/tests.sh b/src/nf_modules/kallisto/tests.sh index f8816f0ab6ea505a9c0cb22331107d612f6fadf4..412a29754d7948ba562b31e7b54038db80f60241 100755 --- a/src/nf_modules/kallisto/tests.sh +++ b/src/nf_modules/kallisto/tests.sh @@ -21,20 +21,20 @@ if [ -x "$(command -v singularity)" ]; then ./nextflow src/nf_modules/kallisto/indexing.nf \ -c src/nf_modules/kallisto/indexing.config \ - -profile docker \ + -profile singularity \ --fasta "data/tiny_dataset/fasta/tiny_v2.fasta" \ -resume ./nextflow src/nf_modules/kallisto/mapping_single.nf \ -c src/nf_modules/kallisto/mapping_single.config \ - -profile docker \ + -profile singularity \ --index "results/mapping/index/tiny_v2.index" \ --fastq "data/tiny_dataset/fastq/tiny*_S.fastq" \ -resume ./nextflow src/nf_modules/kallisto/mapping_paired.nf \ -c src/nf_modules/kallisto/mapping_paired.config \ - -profile docker \ + -profile singularity \ --index "results/mapping/index/tiny_v2.index" \ --fastq "data/tiny_dataset/fastq/tiny*_R{1,2}.fastq" \ -resume