diff --git a/src/.docker_modules/bcftools/1.7/docker_init.sh b/src/.docker_modules/bcftools/1.7/docker_init.sh index 9fea98d180dfcb61bf25fee66a507f2c03d5c330..c2bf925159aeb2708d742ff891ff96b5d40bf05a 100755 --- a/src/.docker_modules/bcftools/1.7/docker_init.sh +++ b/src/.docker_modules/bcftools/1.7/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bcftools:1.7 docker build src/.docker_modules/bcftools/1.7 -t 'lbmc/bcftools:1.7' docker push lbmc/bcftools:1.7 diff --git a/src/.docker_modules/bedtools/2.25.0/docker_init.sh b/src/.docker_modules/bedtools/2.25.0/docker_init.sh index e95165abffc20fd2665b5f0a5042c48a2ea121b8..e35c4d6aa13c4fd78c4797d68150471af81ef94a 100755 --- a/src/.docker_modules/bedtools/2.25.0/docker_init.sh +++ b/src/.docker_modules/bedtools/2.25.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bedtools:2.25.0 docker build src/.docker_modules/bedtools/2.25.0 -t 'lbmc/bedtools:2.25.0' docker push lbmc/bedtools:2.25.0 diff --git a/src/.docker_modules/bioawk/1.0/docker_init.sh b/src/.docker_modules/bioawk/1.0/docker_init.sh index 5070477487da743e74fc262ac9a34d7ace361b5d..8e6d7444062e7368f074f0b80386060e0f0b1a07 100755 --- a/src/.docker_modules/bioawk/1.0/docker_init.sh +++ b/src/.docker_modules/bioawk/1.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bioawk:1.0 docker build src/.docker_modules/bioawk/1.0 -t 'lbmc/bioawk:1.0' docker push lbmc/bioawk:1.0 diff --git a/src/.docker_modules/bowtie/1.2.2/docker_init.sh b/src/.docker_modules/bowtie/1.2.2/docker_init.sh index 0328b0363297f1ee0bd2ec96b57e79e2179cbb5e..814a311d967eaf943fd1fa864c8c137ce724c812 100755 --- a/src/.docker_modules/bowtie/1.2.2/docker_init.sh +++ b/src/.docker_modules/bowtie/1.2.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bowtie:1.2.2 docker build src/.docker_modules/bowtie/1.2.2 -t 'lbmc/bowtie:1.2.2' docker push lbmc/bowtie:1.2.2 diff --git a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh index b3ff515edc482be70c76d7090c2a9b54eb793645..bdb93e1663ee77e81a65020a0f25a8df182f9245 100755 --- a/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh +++ b/src/.docker_modules/bowtie2/2.3.4.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bowtie2:2.3.4.1 docker build src/.docker_modules/bowtie2/2.3.4.1 -t 'lbmc/bowtie2:2.3.4.1' docker push lbmc/bowtie2:2.3.4.1 diff --git a/src/.docker_modules/bwa/0.7.17/Dockerfile b/src/.docker_modules/bwa/0.7.17/Dockerfile index 7a538498bc4a1489f31fe2692224c02203042c44..aaf33daf060048053e37131604d5c7fa061bc32d 100644 --- a/src/.docker_modules/bwa/0.7.17/Dockerfile +++ b/src/.docker_modules/bwa/0.7.17/Dockerfile @@ -1,10 +1,10 @@ -FROM sambamba:0.6.7 +FROM lbmc/sambamba:0.6.7 MAINTAINER Laurent Modolo ENV BWA_VERSION=0.7.17 ENV SAMBLASTER_VERSION=0.1.24 -ENV PACKAGES curl=7.58.0* \ +ENV PACKAGES curl=7.58* \ ca-certificates=20180409 \ build-essential=12.4* \ zlib1g-dev=1:1.2.11* diff --git a/src/.docker_modules/bwa/0.7.17/docker_init.sh b/src/.docker_modules/bwa/0.7.17/docker_init.sh index 559e37b97fb58dae24de28d3e33eea92c590ee01..3cabcbd9adcfdc35d6746a3f56534170a2d1d63a 100755 --- a/src/.docker_modules/bwa/0.7.17/docker_init.sh +++ b/src/.docker_modules/bwa/0.7.17/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/bwa:0.7.17 docker build src/.docker_modules/bwa/0.7.17 -t 'lbmc/bwa:0.7.17' docker push lbmc/bwa:0.7.17 diff --git a/src/.docker_modules/canu/1.6/docker_init.sh b/src/.docker_modules/canu/1.6/docker_init.sh index ed22a43341d019441e0bf083c68148ddfb6a065d..b1afabb6dedba67dc9a9537ea570a9c5c62da28f 100755 --- a/src/.docker_modules/canu/1.6/docker_init.sh +++ b/src/.docker_modules/canu/1.6/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/canu:1.6 docker build src/.docker_modules/canu/1.6 -t 'lbmc/canu:1.6' docker push lbmc/canu:1.6 diff --git a/src/.docker_modules/cutadapt/1.14/docker_init.sh b/src/.docker_modules/cutadapt/1.14/docker_init.sh index e0821b65d3cc1408e80497f8583a202c30030a42..1ba18cb47af7cf8a8c9d4d0fee001f8e2d5747b1 100755 --- a/src/.docker_modules/cutadapt/1.14/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.14/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/cutadapt:1.14 docker build src/.docker_modules/cutadapt/1.14 -t 'lbmc/cutadapt:1.14' docker push lbmc/cutadapt:1.14 diff --git a/src/.docker_modules/cutadapt/1.15/docker_init.sh b/src/.docker_modules/cutadapt/1.15/docker_init.sh index ed6c9837f4007110cbd044f74b6fc88a80b1aee9..49303006414d8a1ab61bda8da49b850824dde551 100755 --- a/src/.docker_modules/cutadapt/1.15/docker_init.sh +++ b/src/.docker_modules/cutadapt/1.15/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/cutadapt:1.15 docker build src/.docker_modules/cutadapt/1.15 -t 'lbmc/cutadapt:1.15' docker push lbmc/cutadapt:1.15 diff --git a/src/.docker_modules/cutadapt/2.1/docker_init.sh b/src/.docker_modules/cutadapt/2.1/docker_init.sh index 92b62694e656ca9347d8e895abce6d16ae5194c1..cda255f0f22841d3f9cdf61480a053d47c948071 100755 --- a/src/.docker_modules/cutadapt/2.1/docker_init.sh +++ b/src/.docker_modules/cutadapt/2.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/cutadapt:2.1 docker build src/.docker_modules/cutadapt/2.1 -t 'lbmc/cutadapt:2.1' docker push lbmc/cutadapt:2.1 diff --git a/src/.docker_modules/deeptools/3.0.2/docker_init.sh b/src/.docker_modules/deeptools/3.0.2/docker_init.sh index 4ec75a192605ccd7b9796a33e3441cdb4710c4bc..33959edcd7627e94d34d890d875d6cbe0fced74f 100755 --- a/src/.docker_modules/deeptools/3.0.2/docker_init.sh +++ b/src/.docker_modules/deeptools/3.0.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/deeptools:3.0.2 docker build src/.docker_modules/deeptools/3.0.2 -t 'lbmc/deeptools:3.0.2' docker push lbmc/deeptools:3.0.2 diff --git a/src/.docker_modules/deeptools/3.1.1/docker_init.sh b/src/.docker_modules/deeptools/3.1.1/docker_init.sh index ef698402e9a5fb7e2b2ade8c7bc40af5660cb203..06e63a90199385965a012175fe3f448f75539ba4 100755 --- a/src/.docker_modules/deeptools/3.1.1/docker_init.sh +++ b/src/.docker_modules/deeptools/3.1.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/deeptools:3.1.1 docker build src/.docker_modules/deeptools/3.1.1 -t 'lbmc/deeptools:3.1.1' docker push lbmc/deeptools:3.1.1 diff --git a/src/.docker_modules/fastp/0.19.7/docker_init.sh b/src/.docker_modules/fastp/0.19.7/docker_init.sh index 48c21ffa3a246eddb5d7a83c1ddef677a9049070..1085915c2cfd5caf2599275d8ad50a909704d728 100755 --- a/src/.docker_modules/fastp/0.19.7/docker_init.sh +++ b/src/.docker_modules/fastp/0.19.7/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/fastp:0.19.7 docker build src/.docker_modules/fastp/0.19.7 -t 'lbmc/fastp:0.19.7' docker push lbmc/fastp:0.19.7 diff --git a/src/.docker_modules/fastqc/0.11.5/docker_init.sh b/src/.docker_modules/fastqc/0.11.5/docker_init.sh index fd62c47bb639b8bdd1dc38c34b26612336bc73e6..6b82ff40580dc34b3594278ef2f9c46d36f73560 100755 --- a/src/.docker_modules/fastqc/0.11.5/docker_init.sh +++ b/src/.docker_modules/fastqc/0.11.5/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/fastqc:0.11.5 docker build src/.docker_modules/fastqc/0.11.5 -t 'lbmc/fastqc:0.11.5' docker push lbmc/fastqc:0.11.5 diff --git a/src/.docker_modules/file_handle/0.1.1/docker_init.sh b/src/.docker_modules/file_handle/0.1.1/docker_init.sh index 1dded20bfa792030d901ac08086a12e48f29bf0b..0f1cf512532dc8d72490b9ebb174d90418f4c640 100755 --- a/src/.docker_modules/file_handle/0.1.1/docker_init.sh +++ b/src/.docker_modules/file_handle/0.1.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/file_handle:0.1.1 docker build src/.docker_modules/file_handle/0.1.1 -t 'lbmc/file_handle:0.1.1' docker push lbmc/file_handle:0.1.1 diff --git a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh index 8df1ea88c7f35dd3833eb111af65edb4fa4df904..ddfd8ee0205fa9e9af20878ec561821fc4173057 100755 --- a/src/.docker_modules/gatk/4.0.8.1/docker_init.sh +++ b/src/.docker_modules/gatk/4.0.8.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/gatk:4.0.8.1 docker build src/.docker_modules/gatk/4.0.8.1 -t 'lbmc/gatk:4.0.8.1' docker push lbmc/gatk:4.0.8.1 diff --git a/src/.docker_modules/hisat2/2.0.0/docker_init.sh b/src/.docker_modules/hisat2/2.0.0/docker_init.sh index eae7c398c5b5a8a8bab9e3ce8663c462b69fac97..8bfb16363342039e3fff7057259a8e835c2a8c6d 100755 --- a/src/.docker_modules/hisat2/2.0.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.0.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/hisat2:2.0.0 docker build src/.docker_modules/hisat2/2.0.0 -t 'lbmc/hisat2:2.0.0' docker push lbmc/hisat2:2.0.0 diff --git a/src/.docker_modules/hisat2/2.1.0/docker_init.sh b/src/.docker_modules/hisat2/2.1.0/docker_init.sh index b25f8ac20b80f990f761c202ddfeeefa3f00826d..55fb191ab23cbe7615f70ba5488a227b0b69580a 100755 --- a/src/.docker_modules/hisat2/2.1.0/docker_init.sh +++ b/src/.docker_modules/hisat2/2.1.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/hisat2:2.1.0 docker build src/.docker_modules/hisat2/2.1.0 -t 'lbmc/hisat2:2.1.0' docker push lbmc/hisat2:2.1.0 diff --git a/src/.docker_modules/htseq/0.11.2/docker_init.sh b/src/.docker_modules/htseq/0.11.2/docker_init.sh index d697a6244d798a03497f19dd206a156b615f9c2f..9bd50893380dc1fb19736559551389934802eade 100755 --- a/src/.docker_modules/htseq/0.11.2/docker_init.sh +++ b/src/.docker_modules/htseq/0.11.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/htseq:0.11.2 docker build src/.docker_modules/htseq/0.11.2 -t 'lbmc/htseq:0.11.2' docker push lbmc/htseq:0.11.2 diff --git a/src/.docker_modules/htseq/0.8.0/docker_init.sh b/src/.docker_modules/htseq/0.8.0/docker_init.sh index d41dc8c712678dbc689dbe0febeb7be7cff189be..e322517cf457f8a8a9041da975a7851caf2ab4ef 100755 --- a/src/.docker_modules/htseq/0.8.0/docker_init.sh +++ b/src/.docker_modules/htseq/0.8.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/htseq:0.8.0 docker build src/.docker_modules/htseq/0.8.0 -t 'lbmc/htseq:0.8.0' docker push lbmc/htseq:0.8.0 diff --git a/src/.docker_modules/kallisto/0.43.1/docker_init.sh b/src/.docker_modules/kallisto/0.43.1/docker_init.sh index 384eb6a010a2562a4f1f3c9b5dcf1a59c85e99c6..b93c004d24d291b3c92bab0ca7d9ae7c7131cf7a 100755 --- a/src/.docker_modules/kallisto/0.43.1/docker_init.sh +++ b/src/.docker_modules/kallisto/0.43.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/kallisto:0.43.1 docker build src/.docker_modules/kallisto/0.43.1 -t 'lbmc/kallisto:0.43.1' docker push lbmc/kallisto:0.43.1 diff --git a/src/.docker_modules/kallisto/0.44.0/docker_init.sh b/src/.docker_modules/kallisto/0.44.0/docker_init.sh index e74899cb372399aa3decfd9fbd18934c077527b3..4fa79008a07f4e9a4afe6c8bb20fb8ca60b98858 100755 --- a/src/.docker_modules/kallisto/0.44.0/docker_init.sh +++ b/src/.docker_modules/kallisto/0.44.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/kallisto:0.44.0 docker build src/.docker_modules/kallisto/0.44.0 -t 'lbmc/kallisto:0.44.0' docker push lbmc/kallisto:0.44.0 diff --git a/src/.docker_modules/macs2/2.1.2/docker_init.sh b/src/.docker_modules/macs2/2.1.2/docker_init.sh index 2676105e6f16c051acff170608f16f1245ac5d32..8dc7b2483a1aa91f1f637e26812469f861b68f0e 100755 --- a/src/.docker_modules/macs2/2.1.2/docker_init.sh +++ b/src/.docker_modules/macs2/2.1.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/macs2:2.1.2 docker build src/.docker_modules/macs2/2.1.2 -t 'lbmc/macs2:2.1.2' docker push lbmc/macs2:2.1.2 diff --git a/src/.docker_modules/multiqc/1.0/docker_init.sh b/src/.docker_modules/multiqc/1.0/docker_init.sh index f71a91645447f9d02098844c1864e2ed5ddff33b..1b45ce3e7d6a58c98cf34f7614603dec9ad525fc 100755 --- a/src/.docker_modules/multiqc/1.0/docker_init.sh +++ b/src/.docker_modules/multiqc/1.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/multiqc:1.0 docker build src/.docker_modules/multiqc/1.0 -t 'lbmc/multiqc:1.0' docker push lbmc/multiqc:1.0 diff --git a/src/.docker_modules/multiqc/1.7/docker_init.sh b/src/.docker_modules/multiqc/1.7/docker_init.sh index 926ffe1b24af5809f7273a72ddd18efa7fb26767..e091f04a2752d2fcf2901f580ff8f001c8589df6 100755 --- a/src/.docker_modules/multiqc/1.7/docker_init.sh +++ b/src/.docker_modules/multiqc/1.7/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/multiqc:1.7 docker build src/.docker_modules/multiqc/1.7 -t 'lbmc/multiqc:1.7' docker push lbmc/multiqc:1.7 diff --git a/src/.docker_modules/music/6613c53/docker_init.sh b/src/.docker_modules/music/6613c53/docker_init.sh index 9bcf3037872f3fa37a22b0c70d46affb44e1b610..20e327a97a09ced0c55b16d6a780f35a09e1c881 100755 --- a/src/.docker_modules/music/6613c53/docker_init.sh +++ b/src/.docker_modules/music/6613c53/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/music:6613c53 docker build src/.docker_modules/music/6613c53 -t 'lbmc/music:6613c53' docker push lbmc/music:6613c53 diff --git a/src/.docker_modules/picard/2.18.11/docker_init.sh b/src/.docker_modules/picard/2.18.11/docker_init.sh index 2bd4802e445d8127ceada67e30e4449d4712b0c3..82c4cf7d3bdf581587fa7a3345cff9cb465158ae 100755 --- a/src/.docker_modules/picard/2.18.11/docker_init.sh +++ b/src/.docker_modules/picard/2.18.11/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/picard:2.18.11 docker build src/.docker_modules/picard/2.18.11 -t 'lbmc/picard:2.18.11' docker push lbmc/picard:2.18.11 diff --git a/src/.docker_modules/pigz/2.4/docker_init.sh b/src/.docker_modules/pigz/2.4/docker_init.sh index 2c473f11e9aa2b5d98a315c2ea5c8f8a88307eb5..38d7347d72e9345ca69f54c9d8ea2ac3ec0ebbb8 100755 --- a/src/.docker_modules/pigz/2.4/docker_init.sh +++ b/src/.docker_modules/pigz/2.4/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/pigz:2.4 docker build src/.docker_modules/pigz/2.4 -t 'lbmc/pigz:2.4' docker push lbmc/pigz:2.4 diff --git a/src/.docker_modules/python/3.8/docker_init.sh b/src/.docker_modules/python/3.8/docker_init.sh index a0357e76802fab2fdc34e57b8870eead03c8f562..9a1c9b8b04f56586c6fadda16add7af4f66c3454 100755 --- a/src/.docker_modules/python/3.8/docker_init.sh +++ b/src/.docker_modules/python/3.8/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/python:3.8 docker build src/.docker_modules/python/3.8 -t 'lbmc/python:3.8' docker push lbmc/python:3.8 diff --git a/src/.docker_modules/r/3.5.3/docker_init.sh b/src/.docker_modules/r/3.5.3/docker_init.sh index 8e587ecb0ab5e4590d8a72d0619e9d156bc49902..ce78559716b93f92c3c602cf242dd1d42a1e6220 100755 --- a/src/.docker_modules/r/3.5.3/docker_init.sh +++ b/src/.docker_modules/r/3.5.3/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/r:3.5.3 docker build src/.docker_modules/r/3.5.3 -t 'lbmc/r:3.5.3' docker push lbmc/r:3.5.3 diff --git a/src/.docker_modules/rsem/1.3.0/docker_init.sh b/src/.docker_modules/rsem/1.3.0/docker_init.sh index 14a4a6e4f64f2732c639a91fac4eabeaf79f23a8..aadcb4d8ce01353c3510a6a649d640121865bf8d 100755 --- a/src/.docker_modules/rsem/1.3.0/docker_init.sh +++ b/src/.docker_modules/rsem/1.3.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/rsem:1.3.0 docker build src/.docker_modules/rsem/1.3.0 -t 'lbmc/rsem:1.3.0' docker push lbmc/rsem:1.3.0 diff --git a/src/.docker_modules/salmon/0.8.2/docker_init.sh b/src/.docker_modules/salmon/0.8.2/docker_init.sh index 59477e7dff874810d5da384507200a12711a1461..f44850b49c43ae852f1ef93b88a09f301169f780 100755 --- a/src/.docker_modules/salmon/0.8.2/docker_init.sh +++ b/src/.docker_modules/salmon/0.8.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/salmon:0.8.2 docker build src/.docker_modules/salmon/0.8.2 -t 'lbmc/salmon:0.8.2' docker push lbmc/salmon:0.8.2 diff --git a/src/.docker_modules/sambamba/0.6.7/docker_init.sh b/src/.docker_modules/sambamba/0.6.7/docker_init.sh index bf65bcbe7f9d4f7c55ca351699721ecbf600ec91..ccedf316633c21653bde1312e1ccd5376b95fafe 100755 --- a/src/.docker_modules/sambamba/0.6.7/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.7/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/sambamba:0.6.7 docker build src/.docker_modules/sambamba/0.6.7 -t 'lbmc/sambamba:0.6.7' docker push lbmc/sambamba:0.6.7 diff --git a/src/.docker_modules/sambamba/0.6.9/docker_init.sh b/src/.docker_modules/sambamba/0.6.9/docker_init.sh index d740a4f22a0bdb5ad1c38faa8f7125463fca42ae..9525b17e688d739198a1421f641c2281b45ade9a 100755 --- a/src/.docker_modules/sambamba/0.6.9/docker_init.sh +++ b/src/.docker_modules/sambamba/0.6.9/docker_init.sh @@ -1,4 +1,4 @@ #!/bin/sh +docker pull lbmc/sambamba:0.6.9 docker build src/.docker_modules/sambamba/0.6.9 -t 'lbmc/sambamba:0.6.9' docker push lbmc/sambamba:0.6.9 -docker push lbmc/sambamba:0.6.9 diff --git a/src/.docker_modules/samblaster/0.1.24/docker_init.sh b/src/.docker_modules/samblaster/0.1.24/docker_init.sh index 4fb8a737690903753b7e719a8e7d0926798bb0e6..0fec5a0782d348935647212a430f9c1efe7d4367 100755 --- a/src/.docker_modules/samblaster/0.1.24/docker_init.sh +++ b/src/.docker_modules/samblaster/0.1.24/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/samblaster:0.1.24 docker build src/.docker_modules/samblaster/0.1.24 -t 'lbmc/samblaster:0.1.24' docker push lbmc/samblaster:0.1.24 diff --git a/src/.docker_modules/samtools/1.7/docker_init.sh b/src/.docker_modules/samtools/1.7/docker_init.sh index a5819309117ae9ced1c4ba7af0475e561bf83e60..83c510a9e6fe22e1c28eac9bed5e44d1c707da15 100755 --- a/src/.docker_modules/samtools/1.7/docker_init.sh +++ b/src/.docker_modules/samtools/1.7/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/samtools:1.7 docker build src/.docker_modules/samtools/1.7 -t 'lbmc/samtools:1.7' docker push lbmc/samtools:1.7 diff --git a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh index 759c2835708a4d4448fea6f32d7f4a55796ace86..ce040fcc1b3ed4f7041d01421e7a2031d983ef6f 100755 --- a/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh +++ b/src/.docker_modules/sratoolkit/2.8.2/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/sratoolkit:2.8.2 docker build src/.docker_modules/sratoolkit/2.8.2 -t 'lbmc/sratoolkit:2.8.2' docker push lbmc/sratoolkit:2.8.2 diff --git a/src/.docker_modules/star/2.7.3a/docker_init.sh b/src/.docker_modules/star/2.7.3a/docker_init.sh index c3e325fb8a227bd6ab3ab97876402afeca1fbceb..50beecfcc7fcb7a9b1943a418651cafb55851495 100755 --- a/src/.docker_modules/star/2.7.3a/docker_init.sh +++ b/src/.docker_modules/star/2.7.3a/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/star:2.7.3a docker build src/.docker_modules/star/2.7.3a/ -t 'lbmc/star:2.7.3a' docker push lbmc/star:2.7.3a diff --git a/src/.docker_modules/subread/1.6.4/docker_init.sh b/src/.docker_modules/subread/1.6.4/docker_init.sh index 9e8dc1571ace4feab11ab65f79329cf30277a0aa..0dd51ca0dbc45ab1b2c237c1a43c670f14dd184a 100755 --- a/src/.docker_modules/subread/1.6.4/docker_init.sh +++ b/src/.docker_modules/subread/1.6.4/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/subread:1.6.4 docker build src/.docker_modules/subread/1.6.4 -t 'lbmc/subread:1.6.4' docker push lbmc/subread:1.6.4 diff --git a/src/.docker_modules/tophat/2.1.1/docker_init.sh b/src/.docker_modules/tophat/2.1.1/docker_init.sh index 212fb6af8b26325b64747729d1b97534d0ef06d8..67151131596b2c2dda5e5cc7beadc69dcd64aa6c 100755 --- a/src/.docker_modules/tophat/2.1.1/docker_init.sh +++ b/src/.docker_modules/tophat/2.1.1/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/tophat:2.1.1 docker build src/.docker_modules/tophat/2.1.1 -t 'lbmc/tophat:2.1.1' docker push lbmc/tophat:2.1.1 diff --git a/src/.docker_modules/trimmomatic/0.36/docker_init.sh b/src/.docker_modules/trimmomatic/0.36/docker_init.sh index 9bcd98b0383e7a0955298d0438c26694aa7f965e..f054581bde67aff212a04284c5f463f8a6e4ab75 100755 --- a/src/.docker_modules/trimmomatic/0.36/docker_init.sh +++ b/src/.docker_modules/trimmomatic/0.36/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/trimmomatic:0.36 docker build src/.docker_modules/trimmomatic/0.36 -t 'lbmc/trimmomatic:0.36' docker push lbmc/trimmomatic:0.36 diff --git a/src/.docker_modules/ucsc/375/docker_init.sh b/src/.docker_modules/ucsc/375/docker_init.sh index e54fadd37b717d09ddef5cf1f92b1b0df81be4c7..f0cc90565cc1f5583eb0c4303976300f695500e0 100755 --- a/src/.docker_modules/ucsc/375/docker_init.sh +++ b/src/.docker_modules/ucsc/375/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/ucsc:375 docker build src/.docker_modules/ucsc/375/ -t 'lbmc/ucsc:375' docker push lbmc/ucsc:375 diff --git a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh index 6314e3f267df56162b9c8c40a131c663a52d1a9b..200e9c066fe98de8262a48eea0f615b064ff90a4 100755 --- a/src/.docker_modules/umi_tools/0.5.4/docker_init.sh +++ b/src/.docker_modules/umi_tools/0.5.4/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/umi_tools:1.0.0 docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' docker push lbmc/umi_tools:1.0.0 diff --git a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh index 6314e3f267df56162b9c8c40a131c663a52d1a9b..200e9c066fe98de8262a48eea0f615b064ff90a4 100755 --- a/src/.docker_modules/umi_tools/1.0.0/docker_init.sh +++ b/src/.docker_modules/umi_tools/1.0.0/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/umi_tools:1.0.0 docker build src/.docker_modules/umi_tools/1.0.0/ -t 'lbmc/umi_tools:1.0.0' docker push lbmc/umi_tools:1.0.0 diff --git a/src/.docker_modules/urqt/d62c1f8/docker_init.sh b/src/.docker_modules/urqt/d62c1f8/docker_init.sh index 5e09a84ffceec21c18f7d64811ed640150197a59..bb3fb4f882ec4f93e4cec643e035fb7d2d7a4963 100755 --- a/src/.docker_modules/urqt/d62c1f8/docker_init.sh +++ b/src/.docker_modules/urqt/d62c1f8/docker_init.sh @@ -1,3 +1,4 @@ #!/bin/sh +docker pull lbmc/urqt:d62c1f8 docker build src/.docker_modules/urqt/d62c1f8 -t 'lbmc/urqt:d62c1f8' docker push lbmc/urqt:d62c1f8