From 6a330a3af86750e4adb6e223aa577eb855377bb6 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Tue, 28 May 2019 13:39:35 +0200
Subject: [PATCH] multiqc: add missing singulairy test
---
src/nf_modules/multiqc/tests.sh | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/multiqc/tests.sh b/src/nf_modules/multiqc/tests.sh
index 0ba60764..ff23852b 100755
--- a/src/nf_modules/multiqc/tests.sh
+++ b/src/nf_modules/multiqc/tests.sh
@@ -13,13 +13,13 @@
if [ -x "$(command -v singularity)" ]; then
./nextflow src/nf_modules/multiqc/multiqc_paired.nf \
-c src/nf_modules/multiqc/multiqc_paired.config \
- -profile docker \
+ -profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_R{1,2}.fastq" \
-resume
./nextflow src/nf_modules/multiqc/multiqc_single.nf \
-c src/nf_modules/multiqc/multiqc_single.config \
- -profile docker \
+ -profile singularity \
--fastq "data/tiny_dataset/fastq/tiny_S.fastq" \
-resume
fi
--
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