From 63d7665d9d578e1d2075557a30314eb554fabbf4 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 17 Apr 2020 16:21:59 +0200
Subject: [PATCH] add link to singularity shared folder at the psmn
---
src/.singularity_psmn | 1 +
src/.update_config.sh | 3 +++
2 files changed, 4 insertions(+)
create mode 120000 src/.singularity_psmn
diff --git a/src/.singularity_psmn b/src/.singularity_psmn
new file mode 120000
index 00000000..a5b71da3
--- /dev/null
+++ b/src/.singularity_psmn
@@ -0,0 +1 @@
+/scratch/Bio/singularity
\ No newline at end of file
diff --git a/src/.update_config.sh b/src/.update_config.sh
index c591051e..080d000f 100644
--- a/src/.update_config.sh
+++ b/src/.update_config.sh
@@ -23,3 +23,6 @@ fd ".*config" src/ -x perl -0777pe 's|E5-2670deb128A,E5-2670deb128B,E5-2670deb12
fd ".*config" src/ -x perl -0777pe 's|monointeldeb128,monointeldeb48,h48-E5-2670deb128,h6-E5-2667v4deb128|monointeldeb128|mg' -i {}
fd ".*config" src/ -x perl -0777pe 's|openmp16|openmp32|mg' -i {}
fd ".*config" src/ -x perl -0777pe 's|cpus = 16|cpus = 32|mg' -i {}
+fd ".*config" src/ -x perl -0777pe "s|'|\"|mg" -i {}
+
+
--
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