From 5e421df0e8e9e3183c0e4eb4ec4cfec8eaae700e Mon Sep 17 00:00:00 2001
From: elabaron <emmanuel.labaronne@ens-lyon.fr>
Date: Wed, 6 Jun 2018 15:10:48 +0000
Subject: [PATCH] RNAseq.nef: fix kallisto block
---
src/RNAseq.nf | 9 ---------
1 file changed, 9 deletions(-)
diff --git a/src/RNAseq.nf b/src/RNAseq.nf
index dd31c13f..c6cbcee5 100644
--- a/src/RNAseq.nf
+++ b/src/RNAseq.nf
@@ -76,15 +76,6 @@ bedtools getfasta -name \
"""
}
-params.fasta = "$baseDir/data/bam/*.fasta"
-
-log.info "fasta files : ${params.fasta}"
-
-Channel
- .fromPath( params.fasta )
- .ifEmpty { error "Cannot find any fasta files matching: ${params.fasta}" }
- .set { fasta_file }
-
process index_fasta {
tag "$fasta.baseName"
publishDir "results/mapping/index/", mode: 'copy'
--
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