From 5991008ec4cf22f7e40c16866b77c3e2a4ade3e0 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Fri, 1 Mar 2019 15:21:28 +0100
Subject: [PATCH] BEDtools: add singularity files
---
.../BEDtools/2.25.0/BEDtools.def | 19 +++++++++++++++++++
.../BEDtools/2.25.0/build.sh | 2 ++
2 files changed, 21 insertions(+)
create mode 100644 src/singularity_modules/BEDtools/2.25.0/BEDtools.def
create mode 100755 src/singularity_modules/BEDtools/2.25.0/build.sh
diff --git a/src/singularity_modules/BEDtools/2.25.0/BEDtools.def b/src/singularity_modules/BEDtools/2.25.0/BEDtools.def
new file mode 100644
index 00000000..0ca0f9ef
--- /dev/null
+++ b/src/singularity_modules/BEDtools/2.25.0/BEDtools.def
@@ -0,0 +1,19 @@
+Bootstrap: docker
+From: ubuntu:16.04
+
+%labels
+MAINTAINER Laurent Modolo
+
+%post
+BEDTOOLS_VERSION=2.25.0
+PACKAGES=bedtools=${BEDTOOLS_VERSION}*
+
+apt-get update && \
+apt-get install -y --no-install-recommends ${PACKAGES} && \
+apt-get clean
+
+%environment
+export BEDTOOLS_VERSION=2.25.0
+
+%runscript
+exec /bin/bash "$@"
diff --git a/src/singularity_modules/BEDtools/2.25.0/build.sh b/src/singularity_modules/BEDtools/2.25.0/build.sh
new file mode 100755
index 00000000..a7c8b822
--- /dev/null
+++ b/src/singularity_modules/BEDtools/2.25.0/build.sh
@@ -0,0 +1,2 @@
+#/bin/sh
+sudo singularity build --force /bin/bedtools:2.25.0.sif src/singularity_modules/BEDtools/2.25.0/BEDtools.def
--
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