diff --git a/CONTRIBUTING.md b/CONTRIBUTING.md index d26d1b26835561a7702c18debbfd6c781568150c..4870dad43de3082b69db4b14c2bd4b34fc15176c 100644 --- a/CONTRIBUTING.md +++ b/CONTRIBUTING.md @@ -7,7 +7,7 @@ email, or on the [ENS-Bioinfo channel](https://matrix.to/#/#ens-bioinfo:matrix.o In git, the [action of forking](https://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project) means that you are going to make your own private copy of a repository. You can then write modifications in your project, and if they are of interest for the source repository create a merge request (here [LBMC/nextflow](https://gitbio.ens-lyon.fr/LBMC/nextflow)). Merge requests are sent to the source repository to ask the maintainers to integrate modifications. - + ## Project organization diff --git a/doc/building_your_pipeline.md b/doc/building_your_pipeline.md index 64c8f4a85a71c56d21a2934218c3ef0927b76d13..fc2c7e86e13c26da1e87ee1d070037d17c871dd9 100644 --- a/doc/building_your_pipeline.md +++ b/doc/building_your_pipeline.md @@ -18,7 +18,7 @@ You are going to build a pipeline for you or your team. So the first step is to Instead of reinventing the wheel, you can use the [LBMC/nextflow](https://gitbio.ens-lyon.fr/LBMC/nextflow) as a template. To easily do so, go to the [LBMC/nextflow](https://gitbio.ens-lyon.fr/LBMC/nextflow) repository and click on the [**fork**](https://gitbio.ens-lyon.fr/LBMC/nextflow/forks/new) button (you need to log-in). - + In git, the [action of forking](https://git-scm.com/book/en/v2/GitHub-Contributing-to-a-Project) means that you are going to make your own private copy of a repository. This repository will keep a link with the original [LBMC/nextflow](https://gitbio.ens-lyon.fr/LBMC/nextflow) project from which you will be able to @@ -88,7 +88,7 @@ file "sample.fasta", emit: fasta_sample At the end of the script, a file named `sample.fasta` is found in the root the folder where `script:` is executed and will be emitted as `fasta_sample`. Using the WebIDE of Gitlab, create a file `src/fasta_sampler.nf` - + The first line that you need to add is