diff --git a/src/nf_modules/FastQC/fastqc_paired.config b/src/nf_modules/FastQC/fastqc_paired.config index 31b0daadc644d0cbe3ebd544744011efc67e8f4b..67e68c78d0192760a9f444f7570be5b4ebc65786 100644 --- a/src/nf_modules/FastQC/fastqc_paired.config +++ b/src/nf_modules/FastQC/fastqc_paired.config @@ -11,13 +11,12 @@ profiles { psmn { process{ withname: fastqc_fastq { - beforeScript = "module purge; module load FastQC/0.11.5" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "FastQC/0.11.5" executor = "sge" cpus = 1 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' + memory = "20GB" + time = "12h" queue = 'monointeldeb128' } } diff --git a/src/nf_modules/FastQC/fastqc_single.config b/src/nf_modules/FastQC/fastqc_single.config index 31b0daadc644d0cbe3ebd544744011efc67e8f4b..67e68c78d0192760a9f444f7570be5b4ebc65786 100644 --- a/src/nf_modules/FastQC/fastqc_single.config +++ b/src/nf_modules/FastQC/fastqc_single.config @@ -11,13 +11,12 @@ profiles { psmn { process{ withname: fastqc_fastq { - beforeScript = "module purge; module load FastQC/0.11.5" + beforeScript = "source /usr/share/lmod/lmod/init/bash; module use ~/privatemodules" + module = "FastQC/0.11.5" executor = "sge" cpus = 1 - memory = "5GB" - time = "6h" - queueSize = 1000 - pollInterval = '60sec' + memory = "20GB" + time = "12h" queue = 'monointeldeb128' } }