From 55c6c00b2902c9959bd725067830fdba74d96579 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Tue, 7 Jul 2020 09:55:13 +0200
Subject: [PATCH] multiqc: add missing section in config file
---
src/nf_modules/multiqc/multiqc_paired.config | 11 +++++++++++
1 file changed, 11 insertions(+)
diff --git a/src/nf_modules/multiqc/multiqc_paired.config b/src/nf_modules/multiqc/multiqc_paired.config
index c8fe4a1d..c7651b6f 100644
--- a/src/nf_modules/multiqc/multiqc_paired.config
+++ b/src/nf_modules/multiqc/multiqc_paired.config
@@ -34,6 +34,17 @@ profiles {
singularity.runOptions = "--bind /Xnfs,/scratch"
process{
withName: fastqc_fastq {
+ container = "lbmc/fastqc:0.11.5"
+ executor = "sge"
+ clusterOptions = "-cwd -V"
+ cpus = 1
+ memory = "5GB"
+ time = "6h"
+ queueSize = 1.70
+ pollInterval = "60sec"
+ queue = "monointeldeb128"
+ }
+ withName: multiqc {
container = "lbmc/multiqc:1.7"
executor = "sge"
clusterOptions = "-cwd -V"
--
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