From 4fe1ec126143fbd16be14f86acfe187103d2f744 Mon Sep 17 00:00:00 2001
From: xgrand <xavier.grand@ens-lyon.fr>
Date: Mon, 20 Sep 2021 14:49:14 +0200
Subject: [PATCH] yaml file creation before integration
---
src/config.yml | 30 ++++--------------------------
1 file changed, 4 insertions(+), 26 deletions(-)
diff --git a/src/config.yml b/src/config.yml
index cdbde956..1b3b999e 100644
--- a/src/config.yml
+++ b/src/config.yml
@@ -1,34 +1,12 @@
input:
row1:
- fastq: "../fastq/5Y_siDDX_CTCF.fastq.gz"
+ sample: 5Y_siDDX_CTCF
+ fastq: "5Y_siDDX_CTCF.fastq.gz"
condition: "siDDX"
type: "IP"
- target: "CTCF"
row2:
- fastq: "../fastq/5Y_siDDX_input.fastq.gz"
+ sample: "5Y_siDDX_input"
+ fastq: "5Y_siDDX_input.fastq.gz"
condition: "siDDX"
type: "Input"
-
- row3:
- fastq: "../fastq/5Y_Ctrl_CTCF.fastq.gz"
- condition: "Ctrl"
- type: "IP"
- target: "CTCF"
-
- row4:
- fastq: "../fastq/5Y_Ctrl_DDX5.fastq.gz"
- condition: "Ctrl"
- type: "IP"
- target: "DDX5"
-
- row5:
- fastq: "../fastq/5Y_Ctrl_DDX17.fastq.gz"
- condition: "Ctrl"
- type: "IP"
- target: "DDX17"
-
- row6:
- fastq: "../fastq/5Y_Ctrl_input.fastq.gz"
- condition: "Ctrl"
- type: "Input"
\ No newline at end of file
--
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