diff --git a/src/nf_modules/macs3/main.nf b/src/nf_modules/macs3/main.nf index 5806e23434a9805380eb28fe6ec1e681cef88d99..1006065736d9544d63f7df98d89c30d61656a112 100644 --- a/src/nf_modules/macs3/main.nf +++ b/src/nf_modules/macs3/main.nf @@ -1,7 +1,7 @@ version = "3.0.0a6" container_url = "lbmc/macs3:${version}" -macs3_genome_size=3e9 +params.macs_gsize=3e9 process peak_calling { container = "${container_url}" @@ -24,7 +24,7 @@ macs3 callpeak \ --control ${bam_control} \ --keep-dup all \ --name ${bam_ip.simpleName} \ - --gsize ${macs3_genome_size} 2> \ + --gsize ${params.macs_gsize} 2> \ ${bam_ip.simpleName}_macs3_report.txt if grep -q "ERROR" ${bam_ip.simpleName}_macs3_report.txt; then @@ -59,7 +59,7 @@ macs3 callpeak \ --control ${bg_control.simpleName}.bed \ --keep-dup all \ --name ${bg_ip.simpleName} \ - --gsize ${macs3_genome_size} 2> \ + --gsize ${params.macs_gsize} 2> \ ${bg_ip.simpleName}_macs3_report.txt if grep -q "ERROR" ${bg_ip.simpleName}_macs3_report.txt; then