diff --git a/README.md b/README.md index d94e7654bd91bc790d65437411de1f3bb066d1b0..6f07ab7b151808aa7ddc91c0d7a55e54e1741d4c 100644 --- a/README.md +++ b/README.md @@ -1,6 +1,13 @@ # nextflow pipeline This repository is a template and a library repository to help you build nextflow pipeline. +You can fork this repository to build your own pipeline. +To get the last commits from this repository into your fork use the following commands: + +```sh +git remote add upstream https://gitlab.biologie.ens-lyon.fr/pipelines/nextflow.git +git pull upstream master +``` ## Getting Started @@ -47,7 +54,7 @@ find src/docker_modules/ -name "docker_init.sh" | awk '{system($0)}' ## Running the tests -To run tests we first need to get a trainning set +To run tests we first need to get a training set ```sh cd data git clone -c http.sslVerify=false https://gitlab.biologie.ens-lyon.fr/LBMC/tiny_dataset.git