From 48c10de5a760804774834cfd5f9c70bad7fa128b Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Fri, 24 Jul 2020 17:24:06 +0200
Subject: [PATCH] docker: add gffread:0.11.8
---
src/.docker_modules/gffread/0.11.8/Dockerfile | 14 ++++++++++++++
src/.docker_modules/gffread/0.11.8/docker_init.sh | 4 ++++
2 files changed, 18 insertions(+)
create mode 100644 src/.docker_modules/gffread/0.11.8/Dockerfile
create mode 100755 src/.docker_modules/gffread/0.11.8/docker_init.sh
diff --git a/src/.docker_modules/gffread/0.11.8/Dockerfile b/src/.docker_modules/gffread/0.11.8/Dockerfile
new file mode 100644
index 00000000..f56e906c
--- /dev/null
+++ b/src/.docker_modules/gffread/0.11.8/Dockerfile
@@ -0,0 +1,14 @@
+FROM alpine:3.12
+MAINTAINER Laurent Modolo
+
+ENV GFFREAD_VERSION=0.11.8
+ENV PACKAGES make \
+ g++
+
+RUN apk update && \
+ apk add ${PACKAGES} && \
+wget http://ccb.jhu.edu/software/stringtie/dl/gffread-${GFFREAD_VERSION}.tar.gz && \
+tar -xvf gffread-${GFFREAD_VERSION}.tar.gz && \
+cd gffread-${GFFREAD_VERSION}/ && \
+make && \
+cp gffread /usr/bin/
diff --git a/src/.docker_modules/gffread/0.11.8/docker_init.sh b/src/.docker_modules/gffread/0.11.8/docker_init.sh
new file mode 100755
index 00000000..44c18612
--- /dev/null
+++ b/src/.docker_modules/gffread/0.11.8/docker_init.sh
@@ -0,0 +1,4 @@
+#!/bin/sh
+docker pull lbmc/gffread:0.11.8
+docker build src/.docker_modules/gffread/0.11.8 -t 'lbmc/gffread:0.11.8'
+docker push lbmc/gffread:0.11.8
--
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