From 40ebfabddd5936318aa1a8fdbc2f16319c6a2cdc Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Wed, 24 Feb 2021 10:44:33 +0100
Subject: [PATCH] picard: fix output name of index_fasta
---
src/nf_modules/picard/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/picard/main.nf b/src/nf_modules/picard/main.nf
index d7889927..aa24096c 100644
--- a/src/nf_modules/picard/main.nf
+++ b/src/nf_modules/picard/main.nf
@@ -33,13 +33,13 @@ process index_fasta {
input:
tuple val(file_id), path(fasta)
output:
- tuple val(file_id), path("*.dict"), emit: index
+ tuple val(file_id), path("*.dict"), emit: index
script:
"""
PicardCommandLine CreateSequenceDictionary \
REFERENCE=${fasta} \
-OUTPUT=${fasta}.dict
+OUTPUT=${fasta.baseName}.dict
"""
}
--
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