diff --git a/src/in2p3.pbs b/src/in2p3.pbs index ac6d0869b5e227485abc011be934bfe5e35cb3f3..bb4f7dff881ab3a4013e086d94f034432a970174 100644 --- a/src/in2p3.pbs +++ b/src/in2p3.pbs @@ -25,7 +25,7 @@ PIPELINE=${SCRATCH}/nextflow/src/training_dataset.nf CONFIG=${SCRATCH}/nextflow/src/training_dataset.config ${NF} ${PIPELINE} -c ${CONFIG} -profile ccin2p3 \ ---fasta "${SCRATCH}/nextflow/data/genome.fa" \ ---fastq_single "${SCRATCH}/nextflow/data/*_R1.fastq.gz" \ +--fasta "${SCRATCH}/nextflow/data/tiny_dataset/fasta/tiny_v2.fasta" \ +--fastq_single "${SCRATCH}/nextflow/data/tiny_dataset/fastq/tiny2_S.fastq.gz" \ --chromosome "X" --start 5305683 --stop 5333928 -resume -w "${SCRATCH}"