From 3c6a5e9ff342f8e4f506e0c1ef4c14209ee557f0 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 29 Apr 2021 10:58:58 +0200
Subject: [PATCH] kb: fix params.count
---
src/nf_modules/kb/main.nf | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf
index 2b771d3f..97d90b27 100644
--- a/src/nf_modules/kb/main.nf
+++ b/src/nf_modules/kb/main.nf
@@ -156,7 +156,7 @@ process kb_default {
-g ${transcript_to_gene} \
${whitelist_param} \
-x 10XV3
- ${params.mapping_fastq} \
+ ${params.count} \
-o ${file_prefix} \
${reads[0]} ${reads[1]} &> ${file_prefix}_kb_mapping_report.txt
"""
@@ -203,8 +203,8 @@ process kb_marseq {
-i ${index} \
-g ${transcript_to_gene} \
${whitelist_param} \
+ ${params.count} \
-x 1,0,6:1,6,14:1,14,0
- ${params.mapping_fastq} \
-o ${file_prefix} \
${reads[0]} ${reads[1]} &> ${file_prefix}_kb_mapping_report.txt
"""
--
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