diff --git a/src/nf_modules/kb/main.nf b/src/nf_modules/kb/main.nf index 2b771d3f2bbfd47a0fadafccb6c219c5ac8a7f9b..97d90b27811e948b91c34ddce9947d6880064e68 100644 --- a/src/nf_modules/kb/main.nf +++ b/src/nf_modules/kb/main.nf @@ -156,7 +156,7 @@ process kb_default { -g ${transcript_to_gene} \ ${whitelist_param} \ -x 10XV3 - ${params.mapping_fastq} \ + ${params.count} \ -o ${file_prefix} \ ${reads[0]} ${reads[1]} &> ${file_prefix}_kb_mapping_report.txt """ @@ -203,8 +203,8 @@ process kb_marseq { -i ${index} \ -g ${transcript_to_gene} \ ${whitelist_param} \ + ${params.count} \ -x 1,0,6:1,6,14:1,14,0 - ${params.mapping_fastq} \ -o ${file_prefix} \ ${reads[0]} ${reads[1]} &> ${file_prefix}_kb_mapping_report.txt """