From 364632ef9f5f10fb71bc088b1a48addedb15e330 Mon Sep 17 00:00:00 2001 From: Laurent Modolo <laurent.modolo@ens-lyon.fr> Date: Mon, 15 Mar 2021 11:58:32 +0100 Subject: [PATCH] Docker: add minimap2:2.17 --- src/.docker_modules/minimap2/2.17/Dockerfile | 25 +++++++++++++++++++ .../minimap2/2.17/docker_init.sh | 4 +++ 2 files changed, 29 insertions(+) create mode 100644 src/.docker_modules/minimap2/2.17/Dockerfile create mode 100755 src/.docker_modules/minimap2/2.17/docker_init.sh diff --git a/src/.docker_modules/minimap2/2.17/Dockerfile b/src/.docker_modules/minimap2/2.17/Dockerfile new file mode 100644 index 00000000..1f5b05c0 --- /dev/null +++ b/src/.docker_modules/minimap2/2.17/Dockerfile @@ -0,0 +1,25 @@ +FROM quay.io/biocontainers/samtools:0.1.18--hfb9b9cc_10 AS samtools +# /usr/local/bin/samtools +# / # ldd /usr/local/bin/samtools +# /lib64/ld-linux-x86-64.so.2 (0x7efddcdcc000) +# libncurses.so.6 => /usr/local/bin/../lib/libncurses.so.6 (0x7efddcfad000) +# libtinfo.so.6 => /usr/local/bin/../lib/libtinfo.so.6 (0x7efddcf6f000) +# libm.so.6 => /lib64/ld-linux-x86-64.so.2 (0x7efddcdcc000) +# libz.so.1 => /usr/local/bin/../lib/libz.so.1 (0x7efddcf55000) +# libc.so.6 => /lib64/ld-linux-x86-64.so.2 (0x7efddcdcc000) + +FROM quay.io/biocontainers/minimap2:2.17--hed695b0_3 +MAINTAINER Laurent Modolo +ENV MINIMAP2_VERSION=2.17 + +COPY --from=samtools /usr/local/bin/samtools /usr/local/bin/ +COPY --from=samtools /usr/local//lib/libncurses.so.6 /usr/local/lib/ +COPY --from=samtools /usr/local//lib/libtinfo.so.6 /usr/local/lib/ + +# /usr/local/bin/minimap2 +# / # ldd /usr/local/bin/minimap2 +# /lib64/ld-linux-x86-64.so.2 (0x7fe14f5a8000) +# libm.so.6 => /lib64/ld-linux-x86-64.so.2 (0x7fe14f5a8000) +# libz.so.1 => /usr/local/bin/../lib/libz.so.1 (0x7fe14f7c4000) +# libpthread.so.0 => /lib64/ld-linux-x86-64.so.2 (0x7fe14f5a8000) +# libc.so.6 => /lib64/ld-linux-x86-64.so.2 (0x7fe14f5a8000) \ No newline at end of file diff --git a/src/.docker_modules/minimap2/2.17/docker_init.sh b/src/.docker_modules/minimap2/2.17/docker_init.sh new file mode 100755 index 00000000..773f0cf6 --- /dev/null +++ b/src/.docker_modules/minimap2/2.17/docker_init.sh @@ -0,0 +1,4 @@ +#!/bin/sh +docker pull lbmc/minimap2:2.17 +docker build src/.docker_modules/minimap2/2.17 -t 'lbmc/minimap2:2.17' +docker push lbmc/minimap2:2.17 -- GitLab