From 34b4db9d57129c6da3c74f470ae9a0c136bac607 Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent.modolo@ens-lyon.fr>
Date: Thu, 15 Apr 2021 11:27:53 +0200
Subject: [PATCH] bwa: new change and library def
---
src/nf_modules/bwa/main.nf | 7 ++++---
1 file changed, 4 insertions(+), 3 deletions(-)
diff --git a/src/nf_modules/bwa/main.nf b/src/nf_modules/bwa/main.nf
index d427549c..1fd03feb 100644
--- a/src/nf_modules/bwa/main.nf
+++ b/src/nf_modules/bwa/main.nf
@@ -49,9 +49,10 @@ process mapping_fastq {
if (file_id instanceof List){
library = file_id[0]
file_prefix = file_id[0]
- } else if (file_id.containsKey('library')) {
- library = file_id.library
- file_prefix = file_id.id
+ if (file_id.containsKey('library')) {
+ library = file_id.library
+ file_prefix = file_id.id
+ }
} else {
library = file_id
file_prefix = file_id
--
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