From 343b5dd409f3303171195d4b1662140749b8a8ae Mon Sep 17 00:00:00 2001
From: Laurent Modolo <laurent@modolo.fr>
Date: Thu, 23 Apr 2020 14:03:26 +0200
Subject: [PATCH] docker: gatk3 increase java memory

---
 src/.docker_modules/gatk/3.8.0/Dockerfile | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/.docker_modules/gatk/3.8.0/Dockerfile b/src/.docker_modules/gatk/3.8.0/Dockerfile
index 2ef48edd..af8e3044 100644
--- a/src/.docker_modules/gatk/3.8.0/Dockerfile
+++ b/src/.docker_modules/gatk/3.8.0/Dockerfile
@@ -5,4 +5,4 @@ ENV GATK_VERSION=3.8.0
 
 RUN echo "#\!/bin/sh\njava -jar /usr/GenomeAnalysisTK.jar \$@" > /bin/gatk3 
 RUN chmod +x /bin/gatk3
-RUN sed -i 's/java/java -Xmx40g/g' /bin/gatk3
+RUN sed -i 's/java/java -Xmx128g/g' /bin/gatk3
-- 
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